Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Atu3151ABC transporter, substrate binding protein (sugar). (423 aa)    
Predicted Functional Partners:
Atu3149
ABC transporter, membrane spanning protein (sugar).
 
 0.984
Atu3150
ABC transporter, membrane spanning protein (sugar).
 
  0.982
Atu3148
ABC transporter, nucleotide binding/ATPase protein (sugar); Belongs to the ABC transporter superfamily.
  
 0.932
Atu3147
Oxidoreductase.
 
    0.752
Atu3152
Transcriptional regulator, AraC family.
 
     0.691
Atu2506
ABC transporter, membrane spanning protein (sugar).
  
   0.636
Atu2505
ABC transporter, substrate binding protein (sugar).
  
     0.632
Atu4250
ABC transporter, membrane spanning protein (sugar).
  
   0.602
Atu4251
ABC transporter, membrane spanning protein (sugar).
  
   0.602
Atu4584
Transcriptional regulator, TetR family.
  
     0.583
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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