STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu3152Transcriptional regulator, AraC family. (296 aa)    
Predicted Functional Partners:
Atu3147
Oxidoreductase.
 
    0.700
Atu3151
ABC transporter, substrate binding protein (sugar).
 
     0.685
Atu1438
Transcriptional regulator, AraC family.
  
     0.624
Atu3227
Transcriptional regulator, AraC family.
  
     0.578
Atu1081
Transcriptional regulator, AraC family.
  
     0.560
Atu0410
Transcriptional regulator, AraC family.
  
     0.554
pobR
Transcriptional regulator, AraC family.
  
   0.514
Atu4644
Transcriptional regulator, AraC family.
  
     0.498
Atu4575
Transcriptional regulator, AraC family.
  
     0.468
thuA
Trehalose utilization-related protein.
  
     0.467
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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