Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
speFOrnithine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family. (377 aa)    
Predicted Functional Partners:
arcA
Arginase; Belongs to the arginase family.
  
 
 0.944
speB
Agmatinase; Belongs to the arginase family.
  
 
 0.929
Atu1002
Aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
     
 0.903
Atu3768
Homospermidine synthase.
 
     0.704
pssA
Phosphatidylserine synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
 
  
 0.638
Atu3194
Acetyltransferase.
 
     0.565
Atu0361
Transcriptional regulator.
  
   
 0.549
guaA-2
GMP synthase; Catalyzes the synthesis of GMP from XMP.
  
  
 0.547
Atu3072
Peptide synthetase; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 
 0.543
Atu1838
ABC transporter, substrate binding protein (amino acid).
  
   
 0.506
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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