Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Atu3214ABC transporter, membrane spanning protein (oligopeptide). (276 aa)    
Predicted Functional Partners:
Atu3213
ABC transporter, membrane spanning protein (oligopeptide).
 
  0.997
Atu3212
ABC transporter, substrate binding protein (oligopeptide).
 
  0.994
Atu3215
ABC transporter, nucleotide binding/ATPase protein (oligopeptide).
   0.979
Atu3216
ABC transporter, nucleotide binding/ATPase protein (oligopeptide).
   0.977
aspC
Aspartate aminotransferase.
       0.886
Atu3436
ABC transporter, nucleotide binding/ATPase protein (oligopeptide); Belongs to the ABC transporter superfamily.
   0.865
dppD
ABC transporter, nucleotide binding/ATPase protein; Belongs to the ABC transporter superfamily.
   0.852
nikB
ABC transporter, membrane spanning protein.
  
   0.850
dppB-2
ABC transporter, membrane spanning protein (peptide).
  
   0.848
Atu4439
ABC transporter, membrane spanning protein (oligopeptide).
  
   0.848
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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