STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu3240Transcriptional regulator, ROK family. (399 aa)    
Predicted Functional Partners:
Atu3239
ABC transporter, substrate binding protein (sugar).
 
    0.775
Atu3034
Transcriptional regulator, ROK family.
  
    0.726
Atu3242
Conserved hypothetical protein.
 
     0.683
Atu3241
Dehydrogenase.
       0.659
Atu3238
ABC transporter, membrane spanning protein (sugar).
 
     0.552
Atu3237
ABC transporter, membrane spanning protein (sugar).
 
     0.543
Atu0527
Two component sensor kinase/response regulator hybrid.
  
  
 0.520
Atu2609
Transcriptional regulator, ROK family.
  
    0.488
lpiA
Protein regulated by acid pH.
     
 0.466
nadE
NAD (+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
 
  
 0.461
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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