Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Atu3261ABC transporter, membrane spanning protein. (606 aa)    
Predicted Functional Partners:
Atu3260
ABC transporter, substrate binding protein.
 
 
 0.997
Atu4827
ABC transporter, membrane spanning protein.
 
0.986
Atu2742
Conserved hypothetical protein.
 
 0.973
Atu3136
ABC transporter, membrane spanning protein.
 
 0.971
Atu3157
ABC transporter, membrane spanning protein.
 
 0.955
Atu3254
ABC transporter, nucleotide binding/ATPase protein (dicarboxylate).
 
 0.943
Atu3366
Tripartite ATP-independent periplasmic transporter, DctQ component.
 
 
  0.918
Atu3158
ABC transporter, substrate binding protein.
 
  
 0.896
Atu2744
C4-dicarboxylate binding protein.
 
  
 0.895
Atu3137
C4-dicarboxylate-binding protein.
 
  
 0.895
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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