STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu3269ABC transporter, substrate binding protein (dipeptide). (508 aa)    
Predicted Functional Partners:
Atu3268
ABC transporter, membrane spanning protein (dipeptide).
 
  0.985
Atu3267
ABC transporter, membrane spanning protein (dipeptide).
 
  0.983
Atu3266
Conserved hypothetical protein; Esterase that catalyzes the deacetylation of acetyl-(R)- mandelate (in vitro). Can also hydrolyze acetyl glycolate, but with lower efficiency. Has very low N-acetyl-D-amino acid deacetylase activity with N-acetyl-D-serine and N-acetyl-D-threonine (in vitro). Theoretical substrate docking studies suggest that other N-acetylated amino acids may optimally occupy the active site and may in fact be the physiological substrates; Belongs to the metallo-dependent hydrolases superfamily. Atu3266/EF_0837 deacetylase family.
 
     0.714
Atu3270
Hypothetical protein.
       0.596
dppB-2
ABC transporter, membrane spanning protein (peptide).
  
   0.582
Atu3378
ABC transporter, membrane spanning protein (oligopeptide).
  
   0.558
Atu4525
ABC transporter, substrate binding protein (oligopeptide).
  
  
 
0.519
Atu0946
Dehydrogenase.
  
     0.512
Atu3375
ABC transporter, substrate binding protein (peptide).
  
  
 
0.511
Atu4440
ABC transporter, membrane spanning protein (oligopeptide).
  
   0.492
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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