STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu3276Conserved hypothetical protein. (1341 aa)    
Predicted Functional Partners:
ialB-2
Invasion associated protein B.
 
     0.816
Atu3687
TonB-dependent receptor.
  
 
 
 0.642
Atu4400
Ferrienterobactin-like protein.
  
 
 
 0.611
hasR
Heme receptor.
    
 
 0.557
Atu3278
Aryl-alcohol dehydrogenase.
       0.470
Atu3277
Nitrilotriacetate monooxygenase.
       0.460
Atu3279
Methanesulfonate sulfonatase.
       0.460
Atu8032
Conserved hypothetical protein.
  
     0.433
glmS-2
Glucosamine--fructose-6-phosphate aminotransferase.
   
    0.420
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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