STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dadAD-amino acid dehydrogenase, small subunit; Oxidative deamination of D-amino acids; Belongs to the DadA oxidoreductase family. (418 aa)    
Predicted Functional Partners:
alr-2
Alanine racemase; Isomerizes L-alanine to D-alanine which is then oxidized to pyruvate by DadA.
  
 
 0.925
Atu3364
D-amino acid dehydrogenase.
  
  
 
0.925
dadA-2
D-amino acid dehydrogenase, small subunit.
  
  
 
0.922
Atu4529
Conserved hypothetical protein.
   
 
 0.908
dat
D-alanine aminotransferase.
     
 0.901
hisC
Histidinol-phosphate aminotransferase.
   
 
  0.900
aatA
Aspartate aminotransferase A.
     
 0.900
hisC-2
Histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
   
 
  0.900
aatA-2
Aspartate aminotransferase A.
     
 0.900
soxA
Sarcosine oxidase alpha subunit.
  
 
 0.729
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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