STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu3300Aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (450 aa)    
Predicted Functional Partners:
attK2
Succinate semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
    
 0.900
Atu3498
Aldehyde dehydrogenase.
    
 0.900
attK
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
    
 0.900
gabD
Succinate semialdehyde dehydrogenase.
   
 0.900
Atu3401
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 0.801
Atu3950
Aldehyde dehydrogenase.
   
 0.801
Atu4153
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
    
 0.801
Atu4849
NADP-dependent aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
    
 0.801
fixR
Short-chain alcohol dehydrogenase.
 
     0.743
bioB
Biotin synthetase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
 
  
 0.659
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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