STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu3314Cellulose synthase. (645 aa)    
Predicted Functional Partners:
Atu3312
Conserved hypothetical protein; Belongs to the glycosyl hydrolase 26 family.
     0.971
Atu3316
dTDP-glucose 4-6-dehydratase.
 
 
 0.908
galE-3
UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
 
   
 0.886
Atu3313
Conserved hypothetical protein.
       0.840
celB
celB protein; Binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); Belongs to the AcsB/BcsB family.
 
 
 0.784
parA-2
Chromosome partitioning protein.
  
 
 0.640
exoQ-3
Exopolysaccharide production protein.
 
   
 0.570
Atu3757
Conserved hypothetical protein.
 
 
 0.533
exoK
Endo-1,3-1,4-beta-glycanase.
 
     0.530
Atu4503
Creatinine amidohydrolase.
  
  
 0.525
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.