STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Cooccurrence
Coexpression
Experiments
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[Homology]
Score
exoYSuccinoglycan exopolysaccharide synthesis protein. (226 aa)    
Predicted Functional Partners:
Atu2375
UDP-hexose transferase; Belongs to the glycosyltransferase 26 family.
   
 0.929
exoF
Exopolysaccharide production protein.
 
  
 0.879
bme12
Polysaccharide biosynthesis protein.
 
  
 0.872
exoP-2
Exopolysaccharide polymerization/transport protein.
 
  
 0.852
Atu3556
Exopolysaccharide polymerization/transport protein.
 
  
 0.851
manC
Mannose-1-phosphate guanylyltransferase (GDP); Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.819
exoQ-3
Exopolysaccharide production protein.
  
  
 0.799
Atu3072
Peptide synthetase; Belongs to the ATP-dependent AMP-binding enzyme family.
  
  
 0.773
exoT
Succinoglycan biosynthesis transport protein.
 
  
 0.773
Atu3271
Glycosyltransferase.
 
  
 0.734
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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