Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Atu3328Aldehyde dehydrogenase-like protein. (182 aa)    
Predicted Functional Partners:
Atu1236
Polysaccharide biosynthesis glycosyltransferase.
  
  
 0.763
Atu8030
Hypothetical protein.
       0.741
Atu0245
Transcriptional regulator.
 
   
 0.704
bioA
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
     0.691
Atu3072
Peptide synthetase; Belongs to the ATP-dependent AMP-binding enzyme family.
  
  
 0.685
Atu3682
Non-ribosomal peptide synthetase, siderophore biosynthesis protein.
     
 0.458
Atu4047
Two component sensor kinase/response regulator hybrid.
     
 0.444
Atu1002
Aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
     0.431
Atu3675
Peptide synthetase, siderophore biosynthesis protein.
     
 0.420
Atu3369
Conserved hypothetical protein.
 
  
 0.413
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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