STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
thuATrehalose utilization-related protein. (261 aa)    
Predicted Functional Partners:
ThuB
Trehalose utilization-related protein.
 
  
 0.970
Atu3241
Dehydrogenase.
 
    0.741
Atu4363
Conserved hypothetical protein.
 
    0.741
melA
Alpha-galactosidase.
  
     0.726
Atu3347
Conserved hypothetical protein.
 
    0.721
melA-2
Alpha-galactosidase.
  
     0.701
Atu4376
Conserved hypothetical protein.
 
    0.700
thuE
ABC transporter, substrate binding protein (trehalose/maltose).
     
 0.686
Atu3242
Conserved hypothetical protein.
 
     0.685
Atu3348
Conserved hypothetical protein.
 
    0.684
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.