Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ThuBTrehalose utilization-related protein. (349 aa)    
Predicted Functional Partners:
thuA
Trehalose utilization-related protein.
 
   
 0.983
thuE
ABC transporter, substrate binding protein (trehalose/maltose).
 
   
 0.736
Atu4363
Conserved hypothetical protein.
  
     0.690
thuF
ABC transporter, membrane spanning protein (trehalose/maltose).
 
     0.648
thuG
ABC transporter, membrane spanning protein (trehalose/maltose).
 
     0.641
Atu3147
Oxidoreductase.
  
    0.631
Atu3348
Conserved hypothetical protein.
 
    0.631
thuK
ABC transporter, nucleotide binding/ATPase protein (trehalose/maltose).
       0.596
Atu4376
Conserved hypothetical protein.
 
    0.579
Atu2604
Oxidoreductase.
  
     0.549
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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