Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Atu3347Conserved hypothetical protein. (377 aa)    
Predicted Functional Partners:
Atu3348
Conserved hypothetical protein.
 
  
 0.956
Atu3351
ABC transporter, membrane spanning protein (sugar).
 
     0.848
Atu3350
ABC transporter, membrane spanning protein.
 
     0.803
Atu3352
ABC transporter, substrate binding protein (sugar).
 
     0.795
Atu4376
Conserved hypothetical protein.
 
    0.772
thuA
Trehalose utilization-related protein.
 
     0.719
Atu3242
Conserved hypothetical protein.
 
     0.717
Atu3349
ABC transporter, nucleotide binding/ATPase protein; Belongs to the ABC transporter superfamily.
 
     0.711
exsC
6-pyruvoyl tetrahydropterin synthase.
 
     0.571
exsD
Radical activating protein; Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7-carboxy-7- deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds.
 
     0.569
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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