Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Atu3352ABC transporter, substrate binding protein (sugar). (410 aa)    
Predicted Functional Partners:
Atu3351
ABC transporter, membrane spanning protein (sugar).
 
 0.990
Atu3350
ABC transporter, membrane spanning protein.
 
 0.984
Atu3349
ABC transporter, nucleotide binding/ATPase protein; Belongs to the ABC transporter superfamily.
 
  0.947
Atu0391
ABC transporter, nucleotide binding/ATPase protein; Belongs to the ABC transporter superfamily.
   
 0.921
Atu3171
ABC transporter, nucleotide binding/ATPase protein (sugar); Belongs to the ABC transporter superfamily.
   
 0.872
Atu1401
ABC transporter, nucleotide binding/ATPase protein; Belongs to the ABC transporter superfamily.
   
  0.864
Atu2508
ABC transporter, nucleotide binding/ATPase protein (sugar); Belongs to the ABC transporter superfamily.
   
  0.864
Atu3021
ABC transporter, nucleotide binding/ATPase protein (sugar); Belongs to the ABC transporter superfamily.
   
  0.864
Atu3236
ABC transporter, nucleotide binding/ATPase protein (sugar); Belongs to the ABC transporter superfamily.
   
  0.864
Atu3281
ABC transporter, nucleotide binding/ATPase protein; Belongs to the ABC transporter superfamily.
   
  0.864
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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