Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Atu3355Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (299 aa)    
Predicted Functional Partners:
nac
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.766
Atu4288
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.752
ptxR
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.737
Atu3889
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.735
Atu3155
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.725
gbpR
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.722
Atu4591
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.714
Atu4291
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.706
Atu4872
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.705
gcvA
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.703
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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