STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Atu3359ABC transporter, membrane spanning protein (amino acid). (260 aa)    
Predicted Functional Partners:
Atu3358
ABC transporter, membrane spanning protein (amino acid).
 
 
 
0.992
Atu3360
ABC transporter, nucleotide binding/ATPase protein (amino acid).
 
 
 0.966
Atu3357
ABC transporter, substrate binding protein (amino acid).
 
 
 0.915
Atu4283
ABC transporter, nucleotide binding/ATPase protein.
 
 
 0.849
Atu4533
ABC transporter, nucleotide binding/ATPase protein (amino acid).
 
 
 0.844
Atu1396
ABC transporter, nucleotide binding/ATPase protein.
 
 
 0.842
Atu4235
ABC transporter, nucleotide binding/ATPase protein (amino acid).
 
 
 0.842
Atu4752
ABC transporter, nucleotide binding/ATPase protein (amino acid).
 
 
 0.839
Atu1391
ABC transporter, nucleotide binding/ATPase protein.
 
 
 0.837
Atu4681
ABC transporter, nucleotide binding/ATPase protein (amino acid).
 
 
 0.835
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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