Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Atu3364D-amino acid dehydrogenase. (417 aa)    
Predicted Functional Partners:
dadA
D-amino acid dehydrogenase, small subunit; Oxidative deamination of D-amino acids; Belongs to the DadA oxidoreductase family.
  
  
 
0.925
hisC
Histidinol-phosphate aminotransferase.
   
 
  0.900
aatA
Aspartate aminotransferase A.
     
  0.900
dat
D-alanine aminotransferase.
     
 0.900
hisC-2
Histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
   
 
  0.900
aatA-2
Aspartate aminotransferase A.
     
  0.900
Atu3953
Conserved hypothetical protein; Belongs to the proline racemase family.
 
     0.745
soxA
Sarcosine oxidase alpha subunit.
  
 
 0.708
soxA-2
Sarcosine oxidase alpha subunit.
  
 
 0.708
soxA-3
Sarcosine oxidase alpha subunit.
  
 
 0.708
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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