STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu3367TRAP dicarboxylate transporter, DctM subunit. (489 aa)    
Predicted Functional Partners:
Atu3366
Tripartite ATP-independent periplasmic transporter, DctQ component.
 
  
 0.946
Atu0249
ABC transporter, substrate binding protein (sugar); Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
  
 0.810
Atu3368
Periplasmic mannitol-binding protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
  
 0.810
Atu2744
C4-dicarboxylate binding protein.
     0.553
Atu3158
ABC transporter, substrate binding protein.
     0.543
Atu4826
ABC transporter, substrate binding protein.
     0.541
Atu3260
ABC transporter, substrate binding protein.
 
     0.518
Atu3253
ABC transporter, substrate binding protein.
 
     0.489
Atu3137
C4-dicarboxylate-binding protein.
 
     0.487
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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