Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Atu3367TRAP dicarboxylate transporter, DctM subunit. (489 aa)    
Predicted Functional Partners:
Atu3366
Tripartite ATP-independent periplasmic transporter, DctQ component.
 
  
 0.977
Atu0249
ABC transporter, substrate binding protein (sugar); Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
  
 0.819
Atu3368
Periplasmic mannitol-binding protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
  
 0.819
Atu2744
C4-dicarboxylate binding protein.
 
   
 0.566
Atu3158
ABC transporter, substrate binding protein.
 
   
 0.556
Atu4826
ABC transporter, substrate binding protein.
 
   
 0.554
Atu3260
ABC transporter, substrate binding protein.
 
   
 0.532
Atu3253
ABC transporter, substrate binding protein.
 
   
 0.504
Atu3137
C4-dicarboxylate-binding protein.
 
   
 0.502
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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