STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Atu3368Periplasmic mannitol-binding protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system. (365 aa)    
Predicted Functional Partners:
Atu3367
TRAP dicarboxylate transporter, DctM subunit.
 
  
 0.819
Atu3366
Tripartite ATP-independent periplasmic transporter, DctQ component.
 
  
 0.808
Atu3253
ABC transporter, substrate binding protein.
  
  
 0.563
Atu0157
ABC transporter, substrate binding protein.
  
   
 0.512
Atu3369
Conserved hypothetical protein.
       0.509
glcF
Glycolate oxidase iron-sulfur subunit.
     
 0.467
Atu1879
ABC transporter, substrate binding protein (amino acid); Belongs to the bacterial solute-binding protein 3 family.
   
  
 0.446
exuR
Transcriptional regulator, GntR family.
     
 0.444
Atu0036
Conserved hypothetical protein.
      
 0.443
rpsT
30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.
      
 0.443
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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