Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Atu3375ABC transporter, substrate binding protein (peptide). (525 aa)    
Predicted Functional Partners:
dppB-2
ABC transporter, membrane spanning protein (peptide).
 
  0.995
Atu3377
ABC transporter, nucleotide binding/ATPase protein (peptide); Belongs to the ABC transporter superfamily.
  
  0.980
Atu3378
ABC transporter, membrane spanning protein (oligopeptide).
 
   0.956
Atu3376
Beta-lactamase.
 
     0.907
Atu3267
ABC transporter, membrane spanning protein (dipeptide).
  
   0.697
Atu3268
ABC transporter, membrane spanning protein (dipeptide).
  
   0.664
Atu4696
ABC transporter, membrane spanning protein (oligopeptide).
  
   0.659
Atu4440
ABC transporter, membrane spanning protein (oligopeptide).
  
   0.653
Atu4697
ABC transporter, membrane spanning protein (oligopeptide).
  
   0.627
dppC-5
ABC transporter, membrane spanning protein (dipeptide).
  
   0.622
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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