Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Atu3378ABC transporter, membrane spanning protein (oligopeptide). (272 aa)    
Predicted Functional Partners:
dppB-2
ABC transporter, membrane spanning protein (peptide).
 
   0.978
Atu3375
ABC transporter, substrate binding protein (peptide).
 
   0.956
Atu3377
ABC transporter, nucleotide binding/ATPase protein (peptide); Belongs to the ABC transporter superfamily.
   0.909
nikB
ABC transporter, membrane spanning protein.
  
   0.852
Atu3268
ABC transporter, membrane spanning protein (dipeptide).
  
   0.852
Atu4524
ABC transporter, membrane spanning protein (oligopeptide).
  
   0.852
Atu3434
ABC transporter, membrane spanning protein (oligopeptide).
  
   0.851
Atu4439
ABC transporter, membrane spanning protein (oligopeptide).
  
   0.851
Atu3213
ABC transporter, membrane spanning protein (oligopeptide).
  
   0.848
Atu3376
Beta-lactamase.
       0.848
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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