STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu3386Two component sensor kinase. (331 aa)    
Predicted Functional Partners:
pfrI
Sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.924
Atu0409
Ferrichrome iron receptor.
 
 
 0.873
hasR
Heme receptor.
 
  
 0.865
Atu3692
Sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.849
Atu3687
TonB-dependent receptor.
 
  
 0.707
fhuA
Hydroxamate-type ferrisiderophore receptor.
 
  
 0.631
Atu2287
Outer membrane heme receptor.
 
  
 0.546
Atu4400
Ferrienterobactin-like protein.
 
  
 0.502
Atu3390
ABC transporter, substrate binding protein (iron).
 
    0.438
Atu3389
ABC transporter, membrane spanning protein (iron); Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.420
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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