STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu3400Conserved hypothetical protein. (118 aa)    
Predicted Functional Partners:
Atu3397
Conserved hypothetical protein.
 
     0.808
Atu3399
2-hydroxyacid dehydrogenase.
 
     0.801
hadL-2
2-haloalkanoic acid dehalogenase.
 
     0.747
hadL
Haloalkanoic acid dehalogenase.
 
     0.719
argE
Acetylornithine deacetylase.
 
     0.707
Atu3406
Conserved hypothetical protein.
  
     0.700
ordL-4
Oxidoreductase.
 
    0.679
Atu3409
ABC transporter, substrate binding protein (oligopeptide).
  
     0.663
Atu3402
Tartrate dehydrogenase.
 
    0.653
Atu3407
Aminotransferase, class III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
    0.638
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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