Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
hadLHaloalkanoic acid dehalogenase. (222 aa)    
Predicted Functional Partners:
ordL-4
Oxidoreductase.
 
  
  0.952
Atu3401
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
  
  0.937
Atu0797
Hydrolase.
     
  0.900
Atu3950
Aldehyde dehydrogenase.
     
  0.900
Atu4849
NADP-dependent aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
     
  0.900
Atu3406
Conserved hypothetical protein.
 
    0.860
Atu3409
ABC transporter, substrate binding protein (oligopeptide).
 
     0.814
Atu3414
Putative AgaE.
  
  
  0.809
Atu3407
Aminotransferase, class III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
     0.803
Atu3411
ABC transporter, membrane spanning protein.
 
     0.792
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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