STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu3411ABC transporter, membrane spanning protein. (283 aa)    
Predicted Functional Partners:
Atu3410
ABC transporter, membrane spanning protein.
 
   0.982
Atu3412
ABC transporter, nucleotide binding/ATPase protein; Belongs to the ABC transporter superfamily.
 
   0.978
Atu3409
ABC transporter, substrate binding protein (oligopeptide).
 
   0.932
hadL-2
2-haloalkanoic acid dehalogenase.
 
     0.841
Atu3406
Conserved hypothetical protein.
 
     0.812
Atu3048
ABC transporter, membrane spanning protein (oligopeptide).
  
   0.794
hadL
Haloalkanoic acid dehalogenase.
 
     0.792
nikB
ABC transporter, membrane spanning protein.
  
   0.782
Atu3434
ABC transporter, membrane spanning protein (oligopeptide).
  
   0.763
ordL-4
Oxidoreductase.
 
     0.752
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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