Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Atu3414Putative AgaE. (441 aa)    
Predicted Functional Partners:
hadL
Haloalkanoic acid dehalogenase.
  
  
  0.809
hadL-2
2-haloalkanoic acid dehalogenase.
  
  
  0.796
Atu3406
Conserved hypothetical protein.
 
     0.767
Atu3397
Conserved hypothetical protein.
  
     0.764
Atu3409
ABC transporter, substrate binding protein (oligopeptide).
  
     0.758
soxA
Sarcosine oxidase alpha subunit.
  
 
 0.732
lrp-2
Transcriptional regulator, AsnC family.
 
    0.721
soxA-2
Sarcosine oxidase alpha subunit.
  
 
 0.709
Atu3411
ABC transporter, membrane spanning protein.
  
     0.708
soxA-3
Sarcosine oxidase alpha subunit.
  
 
 0.708
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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