STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu3417ABC transporter, nucleotide binding/ATPase protein. (603 aa)    
Predicted Functional Partners:
Atu3416
ABC transporter, substrate binding protein.
 
 
 0.931
Atu3415
ABC transporter, substrate binding protein.
 
 
 0.878
Atu3418
Acetyltransferase.
     0.848
Atu4679
ABC transporter, membrane spanning protein (amino acid).
 
  0.794
Atu4534
ABC transporter, substrate binding protein (amino acid).
 
 
 0.719
Atu4284
ABC transporter, substrate binding protein (amino acid); Belongs to the bacterial solute-binding protein 3 family.
 
 
 0.714
Atu3419
Hippurate hydrolase.
  
    0.706
Atu3359
ABC transporter, membrane spanning protein (amino acid).
 
 
0.702
Atu4282
ABC transporter, membrane spanning protein (amino acid).
 
 
0.697
Atu4281
ABC transporter, membrane spanning protein (amino acid).
 
 
0.694
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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