STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
acd-5acyl-CoA dehydrogenase. (392 aa)    
Predicted Functional Partners:
fadB-2
enoyl-CoA hydratase.
 
 0.950
etfA
Electron transfer flavoprotein alpha subunit.
 
 
 0.896
Atu3432
Desulfurizing enzyme.
 
    0.884
fadB
Enoyl CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 0.835
Atu3481
Enoyl-CoA hydratase/isomerase family protein.
 
 0.831
Atu0733
enoyl-CoA hydratase/isomerase.
 
 0.810
fad
enoyl-CoA hydratase.
 
 0.807
Atu3505
enoyl-CoA hydratase.
 
 0.795
etfB
Electron transfer flavoprotein beta subunit.
 
 
 0.782
hbdA
3-hydroxybutyryl-CoA dehydrogenase.
 
 0.768
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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