STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu3438Putative oxidoreductase. (351 aa)    
Predicted Functional Partners:
Atu3435
ABC transporter, membrane spanning protein (oligopeptide).
  
    0.725
Atu3434
ABC transporter, membrane spanning protein (oligopeptide).
       0.718
Atu3436
ABC transporter, nucleotide binding/ATPase protein (oligopeptide); Belongs to the ABC transporter superfamily.
       0.718
Atu3437
ABC transporter, nucleotide binding/ATPase protein (oligopeptide); Belongs to the ABC transporter superfamily.
       0.718
acd-6
acyl-CoA dehydrogenase.
  
    0.579
Atu3440
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
       0.556
yafB
Oxidoreductase.
 
 
0.505
Atu0867
Aldo/keto reductase.
 
 
0.500
Atu2032
Aldo/keto reductase.
 
 
0.450
Atu3432
Desulfurizing enzyme.
 
     0.411
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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