Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Atu3441Nitrilotriacetate monooxygenase. (450 aa)    
Predicted Functional Partners:
acd-6
acyl-CoA dehydrogenase.
  
    0.673
Atu3442
ABC transporter, substrate binding protein (oligopeptide).
       0.605
Atu3448
Putative dibenzothiophene desulfurization enzyme B.
 
    0.490
Atu3443
Hypothetical protein.
       0.450
Atu4155
ABC transporter, membrane spanning protein (aliphatic sulphonate).
 
  
 0.427
ssuA
ABC transporter, substrate binding protein (aliphatic sulfonate).
 
    0.412
Atu4154
ABC transporter, substrate binding protein (aliphatic sulfonate).
 
    0.404
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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