STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu3444ABC transporter, substrate binding protein (oligopeptide). (543 aa)    
Predicted Functional Partners:
Atu3445
Hippurate hydrolase.
   
   0.797
Atu3434
ABC transporter, membrane spanning protein (oligopeptide).
 
   0.787
Atu3435
ABC transporter, membrane spanning protein (oligopeptide).
 
   0.783
Atu3213
ABC transporter, membrane spanning protein (oligopeptide).
 
   0.763
Atu3214
ABC transporter, membrane spanning protein (oligopeptide).
 
   0.754
Atu4440
ABC transporter, membrane spanning protein (oligopeptide).
 
   0.679
dppC-5
ABC transporter, membrane spanning protein (dipeptide).
 
   0.635
Atu4439
ABC transporter, membrane spanning protein (oligopeptide).
 
   0.628
dppB-2
ABC transporter, membrane spanning protein (peptide).
 
   0.627
Atu3378
ABC transporter, membrane spanning protein (oligopeptide).
 
   0.625
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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