Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Atu3448Putative dibenzothiophene desulfurization enzyme B. (350 aa)    
Predicted Functional Partners:
Atu3446
Monooxygenase.
 
    0.913
Atu3447
Conserved hypothetical protein.
 
     0.839
Atu3450
Nitrilotriacetate monooxygenase.
 
    0.768
acd-6
acyl-CoA dehydrogenase.
  
    0.712
Atu4155
ABC transporter, membrane spanning protein (aliphatic sulphonate).
 
 
 0.705
Atu0597
Conserved hypothetical protein.
  
     0.626
Atu3444
ABC transporter, substrate binding protein (oligopeptide).
 
     0.622
Atu3424
Hypothetical protein.
  
    0.600
Atu3420
Monooxygenase.
 
    0.594
ssuB1
ABC transporter, nucleotide binding/ATPase protein (aliphatic sulfonate); Part of the ABC transporter complex SsuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system.
 
 
 0.562
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.