Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Atu3456ABC transporter, nucleotide binding/ATPase protein. (252 aa)    
Predicted Functional Partners:
Atu3458
ABC transporter, membrane spanning protein.
  
 0.976
Atu3459
ABC transporter, membrane spanning protein.
 
  
 0.959
Atu3457
ABC transporter, nucleotide binding/ATPase protein.
 
   
0.923
Atu4433
ABC transporter, membrane spanning protein (oligopeptide).
  
 0.792
dppC-2
ABC transporter, membrane spanning protein (dipeptide).
  
 0.776
dppC-4
ABC transporter, membrane spanning protein (dipeptide).
  
 0.762
Atu3455
ABC transporter, substrate binding protein (oligopeptide).
 
  
 0.673
dppB-4
ABC transporter, membrane spanning protein (dipeptide).
 
  
 0.616
Atu4626
ABC transporter, substrate binding protein (oligopeptide).
 
  
 0.605
dppB
ABC transporter, membrane spanning protein (dipeptide).
 
  
 0.602
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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