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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu3456ABC transporter, nucleotide binding/ATPase protein. (252 aa)    
Predicted Functional Partners:
Atu3458
ABC transporter, membrane spanning protein.
  
 0.958
Atu3459
ABC transporter, membrane spanning protein.
 
  
 0.927
Atu3457
ABC transporter, nucleotide binding/ATPase protein.
 
   
0.865
Atu4433
ABC transporter, membrane spanning protein (oligopeptide).
  
 0.780
dppC-2
ABC transporter, membrane spanning protein (dipeptide).
  
 0.764
dppC-4
ABC transporter, membrane spanning protein (dipeptide).
  
 0.750
Atu3455
ABC transporter, substrate binding protein (oligopeptide).
 
  
 0.670
dppB-4
ABC transporter, membrane spanning protein (dipeptide).
 
  
 0.601
Atu4626
ABC transporter, substrate binding protein (oligopeptide).
 
  
 0.601
dppB
ABC transporter, membrane spanning protein (dipeptide).
 
  
 0.586
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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