STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Atu3461Transcriptional regulator, GntR family. (242 aa)    
Predicted Functional Partners:
Atu3815
Transcriptional regulator, GntR family.
  
    0.721
Atu3963
Transcriptional regulator, GntR family.
  
    0.655
Atu4118
Transcriptional regulator, GntR family.
  
    0.649
Atu3532
Transcriptional regulator, GntR family.
  
    0.643
Atu3020
Transcriptional regulator, GntR family.
  
    0.607
Atu1419
Transcriptional regulator, GntR family.
  
    0.590
Atu3462
Transcriptional regulator, AraC family.
  
    0.581
Atu1387
Transcriptional regulator, GntR family.
  
    0.566
Atu4674
Transcriptional regulator, GntR family.
  
    0.558
Atu4702
Transcriptional regulator, GntR family.
  
    0.558
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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