STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu3464Dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (263 aa)    
Predicted Functional Partners:
Atu8032
Conserved hypothetical protein.
       0.771
cpoF
Non-heme chloroperoxidase.
  
  
 0.718
fabG-4
3-oxoacyl-(acyl-carrier-protein) reductase.
  
   0.696
fabG-6
3-oxoacyl-(acyl-carrier protein) reductase.
  
   0.660
Atu2042
Short chain dehydrogenase.
  
   0.639
ditI
Short-chain dehydrogenase.
  
   0.614
Atu2417
Putative gluconate 5-dehydrogenase.
  
   0.580
Atu3462
Transcriptional regulator, AraC family.
 
     0.573
Atu3675
Peptide synthetase, siderophore biosynthesis protein.
  
  
 0.543
blh
Metallo-beta-lactamase superfamily protein; Could play a role in cell adherence or biofilm development. Belongs to the metallo-beta-lactamase superfamily.
  
  
 0.436
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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