STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu3476Transcriptional regulator, AsnC family. (157 aa)    
Predicted Functional Partners:
Atu4006
Transcriptional regulator, AsnC family.
  
     0.583
Atu3481
Enoyl-CoA hydratase/isomerase family protein.
       0.575
hmgL
hydroxymethylglutaryl-CoA lyase.
       0.558
acd-7
acyl-CoA dehydrogenase.
       0.554
mccB
3-methylcrotonoyl-CoA carboxylase beta subunit.
       0.551
mccA
3-methylcrotonyl-CoA carboxylase alpha subunit.
       0.551
mmgC-2
acyl-CoA dehydrogenase.
       0.543
Atu3475
acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
       0.542
bkdA1
2-oxoisovalerate dehydrogenase alpha subunit.
     
 0.471
bkdA2
2-oxoisovalerate dehydrogenase beta subunit.
     
 0.470
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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