Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
mccB3-methylcrotonoyl-CoA carboxylase beta subunit. (533 aa)    
Predicted Functional Partners:
mccA
3-methylcrotonyl-CoA carboxylase alpha subunit.
 0.999
acd-7
acyl-CoA dehydrogenase.
 
 
 0.997
hmgL
hydroxymethylglutaryl-CoA lyase.
 
 
 0.979
fadB-2
enoyl-CoA hydratase.
  
 
 0.974
acd-4
acyl-CoA dehydrogenase.
  
 
 0.934
Atu3481
Enoyl-CoA hydratase/isomerase family protein.
  
 
 0.931
fadB
Enoyl CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 
 0.930
pccA
Propionyl-coenzyme A carboxylase, alpha polypeptide.
  
 0.898
Atu3913
Biotin carboxylase.
  
 0.885
mmgC-2
acyl-CoA dehydrogenase.
 
 
 0.690
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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