STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu3484Conserved hypothetical protein. (430 aa)    
Predicted Functional Partners:
Atu3485
Oxidoreductase.
 
   
 0.948
lyxK
L-xylulose kinase; Belongs to the FGGY kinase family.
    
 0.911
Atu3492
Sugar kinase.
 
   
 0.853
rhaM
Conserved hypothetical protein; Involved in the anomeric conversion of L-rhamnose.
 
     0.819
Atu3487
ABC transporter, substrate binding protein (sugar).
 
     0.810
Atu3486
Transcriptional regulator, DeoR family.
 
     0.797
Atu3490
ABC transporter, membrane spanning protein; Belongs to the binding-protein-dependent transport system permease family.
 
     0.705
Atu3489
ABC transporter, membrane spanning protein; Belongs to the binding-protein-dependent transport system permease family.
 
     0.633
rbsA1
ABC transporter, nucleotide binding/ATPase protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 
     0.445
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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