Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
comFCompetence protein F. (263 aa)    
Predicted Functional Partners:
Atu1305
DNA processing chain A.
 
 
 0.913
Atu0311
Conserved hypothetical protein.
 
  
 0.829
Atu3510
Amidohydrolase.
  
  
 0.820
grx
Glutaredoxin; Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins.
       0.806
Atu1393
Conserved hypothetical protein.
 
  
 0.762
Atu3509
Conserved hypothetical protein.
       0.751
flgC
Flagellar basal-body rod protein; Belongs to the flagella basal body rod proteins family.
   
   0.712
Atu0303
Conserved hypothetical protein; Belongs to the UPF0102 family.
 
    0.692
ribD*
Bifunctional riboflavin deaminase-reductase.
     
 0.692
radC
DNA repair protein; Belongs to the UPF0758 family.
 
    0.685
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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