STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu3527Conserved hypothetical protein. (280 aa)    
Predicted Functional Partners:
Atu3528
Oxidoreductase.
  
 0.877
uxuA-2
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate; Belongs to the mannonate dehydratase family.
     
 0.705
uxuB
Mannitol dehydrogenase.
       0.705
Atu2812
Conserved hypothetical protein.
 
   
 0.696
Atu2816
Oxidoreductase.
 
  
 0.687
fdh
D-threo-aldose 1-dehydrogenase.
 
  
 0.669
fabG-4
3-oxoacyl-(acyl-carrier-protein) reductase.
       0.661
Atu3814
Conserved hypothetical protein.
 
   
 0.645
Atu3532
Transcriptional regulator, GntR family.
       0.608
Atu2811
Conserved hypothetical protein; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
   
 0.590
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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