Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Atu3534ABC transporter, membrane spanning protein; Belongs to the binding-protein-dependent transport system permease family. (346 aa)    
Predicted Functional Partners:
Atu3536
ABC transporter, nucleotide binding/ATPase protein.
 
   0.932
rbsB-3
ABC transporter, substrate binding protein (ribose).
  
   0.834
rbsB
ABC transporter, substrate binding protein (ribose).
  
   0.821
Atu3063
ABC transporter, nucleotide binding/ATPase protein.
  
   0.805
Atu3535
ABC transporter, membrane spanning protein; Belongs to the binding-protein-dependent transport system permease family.
 
    
0.791
rbsB-2
ABC transporter, substrate binding protein (ribose).
  
   0.788
rbsB-4
ABC transporter, substrate binding protein (ribose).
  
   0.782
Atu3533
ABC transporter, substrate binding protein (sugar).
 
   0.775
Atu4371
ABC transporter, membrane spanning protein (sugar); Belongs to the binding-protein-dependent transport system permease family.
  
     0.773
Atu4745
ABC transporter, nucleotide binding/ATPase protein (sugar).
  
   0.758
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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