Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Atu3535ABC transporter, membrane spanning protein; Belongs to the binding-protein-dependent transport system permease family. (325 aa)    
Predicted Functional Partners:
Atu3536
ABC transporter, nucleotide binding/ATPase protein.
 
   0.938
rbsB-3
ABC transporter, substrate binding protein (ribose).
  
   0.835
rbsB
ABC transporter, substrate binding protein (ribose).
  
   0.828
rbsB-4
ABC transporter, substrate binding protein (ribose).
  
   0.807
Atu3063
ABC transporter, nucleotide binding/ATPase protein.
  
   0.800
rbsB-2
ABC transporter, substrate binding protein (ribose).
  
   0.792
Atu3534
ABC transporter, membrane spanning protein; Belongs to the binding-protein-dependent transport system permease family.
 
    
0.791
Atu4745
ABC transporter, nucleotide binding/ATPase protein (sugar).
  
   0.771
Atu4552
ABC transporter, substrate binding protein.
  
   0.768
rbsA-2
ABC transporter, nucleotide binding/ATPase protein (ribose); Part of an ABC transporter complex involved in carbohydrate import. Could be involved in ribose, galactose and/or methyl galactoside import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Carbohydrate importer 2 (CUT2) (TC 3.A.1.2) family.
  
   0.760
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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