STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu3556Exopolysaccharide polymerization/transport protein. (749 aa)    
Predicted Functional Partners:
Atu1236
Polysaccharide biosynthesis glycosyltransferase.
 
  
 0.994
exoF
Exopolysaccharide production protein.
 
 
 0.950
gumB
Polysaccharide export protein.
 
 
 0.942
bme11
Exopolysaccharide production protein.
 
 
 0.924
pssN
Exopolysaccharide export protein.
 
 
 0.870
exoY
Succinoglycan exopolysaccharide synthesis protein.
 
  
 0.868
Atu0102
Exopolysaccharide production protein.
 
  
 0.864
bexD
Polysaccharide export protein.
 
 
 0.850
Atu3557
Conserved hypothetical protein.
 
  
 0.844
Atu8033
Hypothetical protein.
       0.773
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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