STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
exsHEndo-1,3-1,4-beta-glycanase. (465 aa)    
Predicted Functional Partners:
exoQ-3
Exopolysaccharide production protein.
 
   
 0.641
xynA
Endo-1,4-beta-xylanase.
 
   
 0.565
exoK
Endo-1,3-1,4-beta-glycanase.
  
     0.508
exoU-2
Succinoglycan biosynthesis glycosyltransferase.
 
   
 0.504
exoL
Succinoglycan biosynthesis protein.
  
   
 0.466
exoP-2
Exopolysaccharide polymerization/transport protein.
 
   
 0.440
amsJ
Exopolysaccharide synthesis protein.
 
     0.436
greB
Transcription elongation factor.
       0.433
Atu2166
Conserved hypothetical protein.
  
     0.408
Atu4810
Hypothetical protein.
 
   
 0.407
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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