STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu3565Conserved hypothetical protein. (326 aa)    
Predicted Functional Partners:
iolD
Acetolactate synthase; Belongs to the TPP enzyme family.
  
  
 0.513
Atu1849
Hypothetical protein.
  
     0.495
iolB
Conserved hypothetical protein.
  
  
 0.478
Atu3656
Acetyltransferase.
  
     0.477
iolC
Myo-inositol catabolism IolC protein.
  
  
 0.450
Atu4252
ABC transporter, substrate binding protein (sugar).
  
    0.433
Atu0280
Hypothetical protein.
  
     0.431
Atu1148
Conserved hypothetical protein.
  
     0.418
Atu8157
Conserved hypothetical protein.
  
     0.404
Atu1221
Hypothetical protein.
  
    0.400
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.