STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu3570Conserved hypothetical protein. (398 aa)    
Predicted Functional Partners:
Atu3571
Conserved hypothetical protein.
 
  
 0.970
Atu3568
Conserved hypothetical protein.
 
     0.921
Atu3638
Conserved hypothetical protein.
  
  
 0.819
Atu8113
Conserved hypothetical protein.
       0.802
Atu4667
ABC transporter, nucleotide binding/ATPase protein.
  
  
 0.778
Atu3569
Hypothetical protein.
       0.682
Atu3682
Non-ribosomal peptide synthetase, siderophore biosynthesis protein.
  
  
 0.547
Atu1906
ABC transporter, membrane spanning protein.
  
  
 0.546
Atu4668
ABC transporter, membrane spanning protein.
  
  
 0.546
Atu0013
NAD(P)H-flavin oxidoreductase.
  
  
 0.537
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.