Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
xylGABC transporter, nucleotide binding/ATPase protein (xylose). (260 aa)    
Predicted Functional Partners:
xylH
ABC transporter, membrane spanning protein (xylose); Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.994
xylF
ABC transporter, substrate binding protein (xylose).
 
 
 0.991
Atu3577
Transcriptional regulator.
 
     0.645
chvE
Sugar binding protein; Required for effective transcriptional induction of the vir genes by monosaccharides in response to plant signals and for normal growth and chemotaxis towards certain sugars. Functions as a periplasmic multiple sugar-binding receptor protein. It does not interact with a transport system.
 
  
 0.622
frcC
ABC transporter, membrane spanning protein (sugar); Belongs to the binding-protein-dependent transport system permease family.
  
   0.557
frcB
ABC transporter, substrate binding protein (sugar).
  
   0.497
Atu3199
ABC transporter, membrane spanning protein (ribose); Belongs to the binding-protein-dependent transport system permease family.
  
   0.489
Atu3224
ABC transporter, membrane spanning protein (ribose); Belongs to the binding-protein-dependent transport system permease family.
  
   0.481
Atu3225
ABC transporter, membrane spanning protein (ribose); Belongs to the binding-protein-dependent transport system permease family.
  
   0.473
Atu3065
ABC transporter, membrane spanning protein (sugar); Belongs to the binding-protein-dependent transport system permease family.
  
   0.470
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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